МОЛОДЁЖНЫЙ ПРОЕКТ ДЛЯ ТЕХ, КТО ДЕЛАЕТ ПЕРВЫЕ ШАГИ В НАУКЕ
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» 2018. Том 16. Выпуск 1-2Ассимиляция углерода метаболическими системами до и после возникновения LUCA
Литература
Милановский Е.Е. Геопульсация в эволюции Земли // Планета Земля. Энциклопедический справочник. Т. 1: Тектоника и геодинамика / Ред. Красный Л.И., Петров О.В., Блюман Б.Л. СПб.: ВСЕГЕИ, 2004. С. 41—55.
Amend J.P., Shock E.L. "Energetics of Overall Metabolic Reactions of Thermophilic and Hypertermophilic Archaea and Bacteria." FEMS Microbiol. Rev. 25.2 (2001): 175—243. DOI 10.1111/j.1574-6976.2001.tb00576.xю
Barge L.M., Branscomb E., Brucato R., Cardoso S.S.S., Cartwright J.H.E.S., Danielache O., Galante D., Kee T.P., Miguel Y., Mojzsis S., Robinson K.J., Russell M.J., Simoncini E., Sobron P. "Thermodynamics, Disequilibrium, Evolution: Far-From-equilibrium Geological and Chemical Considerations for Origin of Life Research." Orig. Life Evol. Biosph. 47.1 (2017): 39—56. DOI 10.1007/s11084-016-9508-z.
Beal E.J., House C.H., Orphan V.J. "Manganese- and Iron-dependent Marine Methane Oxidation." Science 325.5937 (2009): 184—187. DOI 10.1126/science.1169984.
Braakman R., Smith E. "The Emergence and Early Evolution of Biological Carbon-fixation." PLoS Comput. Biol. 8.4 (2012): 1—16. DOI 10.1371/journal.pcbi.1002455.
Braakman R., Smith E. "The Compositional and Evolutionary Logic of Metabolism." Phys. Biol. 10 (2013): 011001. Web.
Cornish-Bowden A., Cárdenas M.L. "Life Before LUCA." Journ. Theor. Biol. 434 (2017) 68—74. DOI 10.1016/j.jtbi.2017.05.023.
Dodd M.S., Papineau D., Grenne T., Slack J.F., Rittner M., Pirajno F., O’Neil J., Little C.T.S. "Evidence for early Life in Earth’s Oldest Hydrothermal Vent Precipitates." Nature 543.7643 (2017): 60—64. DOI 10.1038/nature21377.
Etiope G., Sherwood Lollar B. "Abiotic Methane on Earth." Rev. Geophys. 51 (2013): 276—299. DOI 10.1002/rog.20011.
Ettwig K.F., Butler M.K., Le Paslier D., Pelletier E., Mangenot S., Kuypers M.M., Schreiber F., Dutilh B.E., Zedelius J., de Beer D., Gloerich J., Wessels H.J., van Alen T., Luesken F., Wu M.L., van de Pas-Schoonen K.T., Opden Camp H.J., Janssen-Megens E.M., Francoijs K.J., Stunnenberg H., Weissenbach J., Jetten M.S., Strous M. "Nitrite-driven Anaerobic Methane Oxidation by Oxygenic Bacteria." Nature 464.7288 (2010): 543—548. DOI 10.1038/nature08883.
Estrada C.F., Mamajanov I., Hao J., Sverjensky D.A., Cody G.D., Hazen R.M. "Aspartate Transformation at 200 °C with Brucite [Mg(OH)2], NH3, and H2: Implications for Prebiotic Molecules in Hydrothermal Systems." Chemical Geol. 457 (2017): 162—172. DOI 10.1016/j.chemgeo.2017.03.025.
Galimov E.M. "Role of Low Solar Luminosity in the History of the Biosphere." Geochemistry Intern. 55.5 (2017): 401—417. DOI 10.1134/S0016702917050068.
Hinrichs K.U., Hayes J.M., Sylva S.P., Brewer P.G., DeLong E.F. "Methane-consuming Archaebacteria in Marine Sediments." Nature 398.6730 (1999): 802—805. DOI 10.1046/j.1462-2920.2003.00454.x.
Kenney J.F., Kutcherov V.A., Bendeliani N.A., Alekseev V.A. "The Evolution of Multicomponent Systems at High Pressures: VI. The Thermodynamic Stability of the Hydrogen-carbon System: The Genesis of Hydrocarbons and the Origin of Petroleum." Proc. Natl. Acad. Sci. 99.2 (2002): 10976—10981. DOI 10.1038/ngeo591.
King G.A.M. "Symbiosis and the Origin of Life." Orig. Life Evol. Biosph. 8.1 (1977): 39—53.
Knittel K., Boetius A. "Anaerobic Oxidation of Methane: Progress with an Unknown Process." Ann. Rev. Microbiol. 63 (2009): 311—334. DOI: 10.1371/journal.pone.0074894. Koonin E.V. "Comparative Genomics, Minimal Gene-sets and the Last Universal Common Ancestor." Nature Rev. Microbiol. 1.2 (2003): 127—136. DOI 10.1038/nrmicro751. Kropotkin P.N. "Degassing of the Earth and the Origin of Hydrocarbons." International Geol. Review 27.11 (1985): 1261—1275. DOI 10.1080/00206818509466501. Letelier J.-C., Cardenas M.L., Cornish-Bowden A. "From L’homme machine to Metabolic Closure: Steps towards Understanding Life." J. Theor. Biol. 286 (2011): 100—113. DOI 10.1016/j.jtbi.2011.06.033. Li Yi-L., Konhauser K.O., Zhai M. "The Formation of Magnetite in the Early Archean Oceans." Earth and Planetary Sci. Lett. 466 (2017): 103—114. DOI 10.1016/j.epsl.2017.03.013. Lineweaver C.H., Chopra A. "The Habitability of Our Earth and Other Earths: Astrophysical, Geochemical, Geophysical, and Biological Limits on Planet Habitability." Annu. Rev. Earth Planet. Sci. 40 (2012): 597—623. DOI 10.1146/annurev-earth-042711-105531. Lv K.-P., Norman L., Li Y.-L. "Oxygen-Free Biochemistry: The Putative CHN Foundation for Exotic Life in a Hydrocarbon World?." Astrobiology 17.11 (2017): 1173—1181. DOI 10.1089/ast.2016.1574. Marakushev A.A., Marakushev S.A. "Fluid Evolution of the Earth and Origin of the Biosphere." Man and the Geosphere. Ed. I.V. Florinsky. New York: Nova Science Publishers, Inc. 2010. 3—31. Marakushev S.A., Belonogova O.V. "The Parageneses Thermodynamic Analysis of Chemoautotrophic СО2 Fixation Archaic Cycle Components, Their Stability and Self-organization in Hydrothermal Systems." J. Theoret. Biol. 257.4 (2009): 588—597. DOI 10.1016/j.jtbi.2008.11.032. Martin W., Russell M.J. "On the Origin of Biochemistry at an Alkaline Hydrothermal Vent." Phil. Trans. R. Soc. B Biol. Sci. 362.1486 (2007): 1887—1925. DOI 10.1098/rstb.2006.1881. Martin W.F., Weiss M.C., Neukirchen S., Nelson-Sathi S., Sousa F.L. "Physiology, Phylogeny, and LUCA." Microbial. Cell 3.12 (2016): 582—587. DOI 10.15698/mic2016.12.545. Morowitz H.G., Kostelnik J.D., Yang J., Cody G.D. "The Origin of Intermediary Metabolism." Proc. Natl. Acad. Sci. USA 97.14 (2000): 7704—7708. DOI. 10.1073/pnas.110153997. Mukhina E., Kolesnikov A., Kutcherov V. "The Lower pT Limit of Deep Hydrocarbon Synthesis by CaCO3 Aqueous Reduction." Scientific Reports 7.1 (2017): 5749—5754. DOI 10.1038/s41598-017-06155-6. Nitschke W., Russell M.J. "Beating the Acetyl Coenzyme A-pathway to the Origin of Life." Philos.Trans. R. Soc. Lond. B 368.1622 (2013): 20120258. DOI 10.1098/rstb.2012.0258. Nivin V.A., Treloar P.J., Konopleva N.G., Ikorsky S.V. "A Review of the Occurrence, Form and Origin of C-bearing Species in the Khibiny Alkaline Igneous Complex, Kola Peninsula, NW Russia." Lithos 85.1–4 (2005): 93—112. DOI.org/10.1016/j.lithos.2005.03.021. Nutman A.P., Bennett V.C., Friend C.R. L., Van Kranendonk M.J., Chivas A.R. "Rapid Emergence of Life Shown by Discovery of 3,700-million-year-old Microbial Structures." Nature 537.7621 (2016): 535—539. DOI 10.1038/nature19355. Pace N.R. "A Molecular View of Microbial Diversity and the Biosphere." Science 276.5313 (1997): 734—740. DOI: 10.1126/science.276.5313.734. Parmon V.N. "Physicochemical Driving Forces and the Pattern of Selection and Evolution of Prebiotic Autocatalytic Systems." Russ. J. Phys. Chem. 76.1 (2002): 126—133. Reysenbach A.-L., Shock E. "Merging Genomes with Geochemistry in Hydrothermal Ecosystems." Science 296.5570 (2002): 1077—1082. DOI 10.1126/science.1072483. Russell M J , Martin W. "The Rocky Roots of the Acetyl-CoA Pathway." Trends Biochem. Sci. 29.7 (2004): 358—363. DOI 10.1016/j.tibs.2004.05.007. Russell M.J., Nitschke W. "Methane: Fuel or Exhaust at the Emergence of Life?." Astrobiology 17.10 (2017): 1—14. DOI 10.1089/ast.2016.1599. Shibuya T., Russell M.J., Takai K. "Free Energy Distribution and Hydrothermal Mineral Precipitation in Hadean Submarine Alkaline Vent Systems: Importance of Iron Redox Reactions under Anoxic Conditions." Geochim. Cosmochim. Acta 175 (2016): 1—19. DOI 10.1016/j.gca.2015.11.021. Scott H.P., Hemley R.J., Mao H., Herschbach D.R., Fried L.E., Howard W.M., Bastea S. "Generation of Methane in the Earth’s Mantle: In Situ High Pressure—Temperature Measurements of Carbonate Reduction." Proc. Natl. Acad. Sci. USA 101.39 (2004): 14023—14026. DOI 10.1073/pnas.0405930101. Spormann A.M., Widdel F. "Metabolism of Alkylbenzenes, Alkanes, and Other Hydrocarbons in Anaerobic Bacteria." Biodegradation 11.2–3 (2000): 85—105. DOI 10.1023/A:1011122631799. Thauer R.K., Shima S. "Methane as Fuel for Anaerobic Microorganisms." Ann. N.Y. Acad. Sci. 1125.1 (2008): 158—170. DOI 10.1196/annals.1419.000. Wächtershäuser G. "Evolution of the First Metabolic Cycles." Proc. Natl. Acad. Sci. USA 87.1 (1990): 200—204. Weiss M.C., Sousa F.L. , Mrnjava, N., Roettger M., Nelson-Sathi S., Martin W.F. "The Physiology and Habitat of the Last Universal Common Ancestor." Nature Microbiol. 1.9 (2016): 16116. DOI 10.1038/nmicrobiol.2016.116. Woese С. "The Universal Ancestor." Proc. Natl. Acad. Sci. USA 95.12 (1998): 6854—6859. References: Amend J.P., Shock E.L. "Energetics of Overall Metabolic Reactions of Thermophilic and Hypertermophilic Archaea and Bacteria." FEMS Microbiol. Rev. 25.2 (2001): 175—243. DOI 10.1111/j.1574-6976.2001.tb00576.xю Barge L.M., Branscomb E., Brucato R., Cardoso S.S.S., Cartwright J.H.E.S., Danielache O., Galante D., Kee T.P., Miguel Y., Mojzsis S., Robinson K.J., Russell M.J., Simoncini E., Sobron P. "Thermodynamics, Disequilibrium, Evolution: Far-From-equilibrium Geological and Chemical Considerations for Origin of Life Research." Orig. Life Evol. Biosph. 47.1 (2017): 39—56. DOI 10.1007/s11084-016-9508-z. Beal E.J., House C.H., Orphan V.J. "Manganese- and Iron-dependent Marine Methane Oxidation." Science 325.5937 (2009): 184—187. DOI 10.1126/science.1169984. Braakman R., Smith E. "The Compositional and Evolutionary Logic of Metabolism." Phys. Biol. 10 (2013): 011001. Web. Braakman R., Smith E. "The Emergence and Early Evolution of Biological Carbon-fixation." PLoS Comput. Biol. 8.4 (2012): 1—16. DOI 10.1371/journal.pcbi.1002455. Cornish-Bowden A., Cárdenas M.L. "Life Before LUCA." Journ. Theor. Biol. 434 (2017) 68—74. DOI 10.1016/j.jtbi.2017.05.023. Dodd M.S., Papineau D., Grenne T., Slack J.F., Rittner M., Pirajno F., O’Neil J., Little C.T.S. "Evidence for early Life in Earth’s Oldest Hydrothermal Vent Precipitates." Nature 543.7643 (2017): 60—64. DOI 10.1038/nature21377. Estrada C.F., Mamajanov I., Hao J., Sverjensky D.A., Cody G.D., Hazen R.M. "Aspartate Transformation at 200 °C with Brucite [Mg(OH)2], NH3, and H2: Implications for Prebiotic Molecules in Hydrothermal Systems." Chemical Geol. 457 (2017): 162—172. DOI 10.1016/j.chemgeo.2017.03.025. Etiope G., Sherwood Lollar B. "Abiotic Methane on Earth." Rev. Geophys. 51 (2013): 276—299. DOI 10.1002/rog.20011. Ettwig K.F., Butler M.K., Le Paslier D., Pelletier E., Mangenot S., Kuypers M.M., Schreiber F., Dutilh B.E., Zedelius J., de Beer D., Gloerich J., Wessels H.J., van Alen T., Luesken F., Wu M.L., van de Pas-Schoonen K.T., Opden Camp H.J., Janssen-Megens E.M., Francoijs K.J., Stunnenberg H., Weissenbach J., Jetten M.S., Strous M. "Nitrite-driven Anaerobic Methane Oxidation by Oxygenic Bacteria." Nature 464.7288 (2010): 543—548. DOI 10.1038/nature08883. Galimov E.M. "Role of Low Solar Luminosity in the History of the Biosphere." Geochemistry Intern. 55.5 (2017): 401—417. DOI 10.1134/S0016702917050068. Hinrichs K.U., Hayes J.M., Sylva S.P., Brewer P.G., DeLong E.F. "Methane-consuming Archaebacteria in Marine Sediments." Nature 398.6730 (1999): 802—805. DOI 10.1046/j.1462-2920.2003.00454.x. Kenney J.F., Kutcherov V.A., Bendeliani N.A., Alekseev V.A. "The Evolution of Multicomponent Systems at High Pressures: VI. The Thermodynamic Stability of the Hydrogen-carbon System: The Genesis of Hydrocarbons and the Origin of Petroleum." Proc. Natl. Acad. Sci. 99.2 (2002): 10976—10981. DOI 10.1038/ngeo591. King G.A.M. "Symbiosis and the Origin of Life." Orig. Life Evol. Biosph. 8.1 (1977): 39—53. Knittel K., Boetius A. "Anaerobic Oxidation of Methane: Progress with an Unknown Process." Ann. Rev. Microbiol. 63 (2009): 311—334. DOI: 10.1371/journal.pone.0074894. Koonin E.V. "Comparative Genomics, Minimal Gene-sets and the Last Universal Common Ancestor." Nature Rev. Microbiol. 1.2 (2003): 127—136. DOI 10.1038/nrmicro751. Kropotkin P.N. "Degassing of the Earth and the Origin of Hydrocarbons." International Geol. Review 27.11 (1985): 1261—1275. DOI 10.1080/00206818509466501. Letelier J.-C., Cardenas M.L., Cornish-Bowden A. "From L’homme machine to Metabolic Closure: Steps towards Understanding Life." J. Theor. Biol. 286 (2011): 100—113. DOI 10.1016/j.jtbi.2011.06.033. Li Yi-L., Konhauser K.O., Zhai M. "The Formation of Magnetite in the Early Archean Oceans." Earth and Planetary Sci. Lett. 466 (2017): 103—114. DOI 10.1016/j.epsl.2017.03.013. Lineweaver C.H., Chopra A. "The Habitability of Our Earth and Other Earths: Astrophysical, Geochemical, Geophysical, and Biological Limits on Planet Habitability." Annu. Rev. Earth Planet. Sci. 40 (2012): 597—623. DOI 10.1146/annurev-earth-042711-105531. Lv K.-P., Norman L., Li Y.-L. "Oxygen-Free Biochemistry: The Putative CHN Foundation for Exotic Life in a Hydrocarbon World?." Astrobiology 17.11 (2017): 1173—1181. DOI 10.1089/ast.2016.1574. Marakushev A.A., Marakushev S.A. "Fluid Evolution of the Earth and Origin of the Biosphere." Man and the Geosphere. Ed. I.V. Florinsky. New York: Nova Science Publishers, Inc. 2010. 3—31. Marakushev S.A., Belonogova O.V. "The Parageneses Thermodynamic Analysis of Chemoautotrophic СО2 Fixation Archaic Cycle Components, Their Stability and Self-organization in Hydrothermal Systems." J. Theoret. Biol. 257.4 (2009): 588—597. DOI 10.1016/j.jtbi.2008.11.032. Martin W., Russell M.J. "On the Origin of Biochemistry at an Alkaline Hydrothermal Vent." Phil. Trans. R. Soc. B Biol. Sci. 362.1486 (2007): 1887—1925. DOI 10.1098/rstb.2006.1881. Martin W.F., Weiss M.C., Neukirchen S., Nelson-Sathi S., Sousa F.L. "Physiology, Phylogeny, and LUCA." Microbial. Cell 3.12 (2016): 582—587. DOI 10.15698/mic2016.12.545. Milanovsky E.E. "Geopulsation in Evolution of the Earth." The Planet Earth. Volume 1: Tectonics and Geodynamics. Eds. L.I. Krasny, O.V. Petrov, B.L. Blyuman. St. Petersburg: A.P. Karpinsky Russian Geological Research Institute Publisher, 2004. 41—55. (In Russian). Morowitz H.G., Kostelnik J.D., Yang J., Cody G.D. "The Origin of Intermediary Metabolism." Proc. Natl. Acad. Sci. USA 97.14 (2000): 7704—7708. DOI. 10.1073/pnas.110153997. Mukhina E., Kolesnikov A., Kutcherov V. "The Lower pT Limit of Deep Hydrocarbon Synthesis by CaCO3 Aqueous Reduction." Scientific Reports 7.1 (2017): 5749—5754. DOI 10.1038/s41598-017-06155-6. Nitschke W., Russell M.J. "Beating the Acetyl Coenzyme A-pathway to the Origin of Life." Philos. Trans. R. Soc. Lond. B 368.1622 (2013): 20120258. DOI 10.1098/rstb.2012.0258. Nivin V.A., Treloar P.J., Konopleva N.G., Ikorsky S.V. "A Review of the Occurrence, Form and Origin of C-bearing Species in the Khibiny Alkaline Igneous Complex, Kola Peninsula, NW Russia." Lithos 85.1–4 (2005): 93—112. DOI.org/10.1016/j.lithos.2005.03.021. Nutman A.P., Bennett V.C., Friend C.R. L., Van Kranendonk M.J., Chivas A.R. "Rapid Emergence of Life Shown by Discovery of 3,700-million-year-old Microbial Structures." Nature 537.7621 (2016): 535—539. DOI 10.1038/nature19355. Pace N.R. "A Molecular View of Microbial Diversity and the Biosphere." Science 276.5313 (1997): 734—740. DOI: 10.1126/science.276.5313.734. Parmon V.N. "Physicochemical Driving Forces and the Pattern of Selection and Evolution of Prebiotic Autocatalytic Systems." Russ. J. Phys. Chem. 76.1 (2002): 126—133. Reysenbach A.-L., Shock E. "Merging Genomes with Geochemistry in Hydrothermal Ecosystems." Science 296.5570 (2002): 1077—1082. DOI 10.1126/science.1072483. Russell M J , Martin W. "The Rocky Roots of the Acetyl-CoA Pathway." Trends Biochem. Sci. 29.7 (2004): 358—363. DOI 10.1016/j.tibs.2004.05.007. Russell M.J., Nitschke W. "Methane: Fuel or Exhaust at the Emergence of Life?." Astrobiology 17.10 (2017): 1—14. DOI 10.1089/ast.2016.1599. Scott H.P., Hemley R.J., Mao H., Herschbach D.R., Fried L.E., Howard W.M., Bastea S. "Generation of Methane in the Earth’s Mantle: In Situ High Pressure—Temperature Measurements of Carbonate Reduction." Proc. Natl. Acad. Sci. USA 101.39 (2004): 14023—14026. DOI 10.1073/pnas.0405930101. Shibuya T., Russell M.J., Takai K. "Free Energy Distribution and Hydrothermal Mineral Precipitation in Hadean Submarine Alkaline Vent Systems: Importance of Iron Redox Reactions under Anoxic Conditions." Geochim. Cosmochim. Acta 175 (2016): 1—19. DOI 10.1016/j.gca.2015.11.021. Spormann A.M., Widdel F. "Metabolism of Alkylbenzenes, Alkanes, and other Hydrocarbons in Anaerobic Bacteria." Biodegradation 11.2–3 (2000): 85—105. DOI 10.1023/A:1011122631799. Thauer R.K., Shima S. "Methane as Fuel for Anaerobic Microorganisms." Ann. N.Y. Acad. Sci. 1125.1 (2008): 158—170. DOI 10.1196/annals.1419.000. Wächtershäuser G. "Evolution of the First Metabolic Cycles." Proc. Natl. Acad. Sci. USA 87.1 (1990): 200—204. Weiss M.C., Sousa F.L. , Mrnjava, N., Roettger M., Nelson-Sathi S., Martin W.F. "The Physiology and Habitat of the Last Universal Common Ancestor." Nature Microbiol. 1.9 (2016): 16116. DOI 10.1038/nmicrobiol.2016.116. Woese С. “The Universal Ancestor.” Proc. Natl. Acad. Sci. USA. 95.12 (1998): 6854—6859.
